PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g03900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 184aa    MW: 20699.1 Da    PI: 6.154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g03900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-212777155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s+++GVr+++ +grW+AeIrdp+    r kr +lg+f+taeeAa  +++a+ kl+g
  Vang01g03900.1 27 SKFRGVRQRP-WGRWAAEIRDPT----RrKRLWLGTFDTAEEAATEYDKAAVKLKG 77
                    79********.**********84....34************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.9E-654183IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008478.2E-142777IPR001471AP2/ERF domain
CDDcd000183.70E-322785No hitNo description
SuperFamilySSF541719.81E-232786IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-312886IPR001471AP2/ERF domain
SMARTSM003803.5E-372891IPR001471AP2/ERF domain
PROSITE profilePS5103224.3162885IPR001471AP2/ERF domain
PRINTSPR003672.3E-102940IPR001471AP2/ERF domain
PRINTSPR003672.3E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRQHHTCPIR KHALVHIRPA GTARRRSKFR GVRQRPWGRW AAEIRDPTRR KRLWLGTFDT  60
AEEAATEYDK AAVKLKGPNA VTNFPLTRPP PVESPFAAID SLSTDGGASY SDLVASPTSV  120
LTYDCDSTPF DSYHYGDVDA LGFHIDAPLS LADVDVSLTC HPYKEEEEAF DEFDLDEFMK  180
WPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-202986664ATERF1
3gcc_A3e-202986664ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502824.11e-110PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-45PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A0L9UWA51e-117A0A0L9UWA5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RL611e-117A0A0S3RL61_PHAAN; Uncharacterized protein
STRINGGLYMA02G40320.12e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-33cytokinin response factor 4